SMTL ID : 6ofw.1

Dihydropteroate synthase from Xanthomonas albilineans in complex with 7,8-dihydropteroate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x 22D: 4-{[(2-amino-4-oxo-3,4-dihydropteridin-6-yl)methyl]amino}benzoic acid(Non-covalent)

22D.1: 13 residues within 4Å: Chain A: D.101, N.120, V.142, M.144, D.190, G.194, F.195, L.220, G.222, K.226, R.227, R.261 Ligands: SO4.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.195, A:K.226 Hydrogen bonds: A:N.120, A:N.120, A:K.226, A:R.227 Water bridges: A:N.202, A:G.222, A:G.222, A:S.228, A:R.241 Salt bridges: A:D.101, A:D.190 pi-Cation interactions: A:K.226 22D.3: 15 residues within 4Å: Chain B: D.101, N.120, V.122, V.142, M.144, D.190, G.194, F.195, L.220, G.222, K.226, R.227, R.261 Ligands: SO4.4, SO4.5 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:K.226 Hydrogen bonds: B:N.120, B:N.120, B:K.226, B:R.227 Water bridges: B:G.222, B:G.222, B:R.227, B:S.228 Salt bridges: B:D.101, B:D.190, B:R.227 pi-Stacking: B:F.195

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: I.25, N.27, R.261, H.263 Ligands: 22D.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.27 Salt bridges: A:R.261, A:H.263 SO4.4: 5 residues within 4Å: Chain B: I.25, N.27, R.261, H.263 Ligands: 22D.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.27 Water bridges: B:R.261 Salt bridges: B:R.261, B:H.263 SO4.5: 4 residues within 4Å: Chain B: R.227, P.238, R.241 Ligands: 22D.3 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.227, B:R.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliveira, A.A. et al., Dihydropteroate synthase from Xanthomonas albilineans in complex with 7,8-dihydropteroate. To Be Published

Release Date

2020-04-08

Peptides

Dihydropteroate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydropteroate synthase

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