SMTL ID : 6q62.2 (1 other biounit)

Xanthomonas albilineans Dihydropteroate synthase in complex with (indole-2-carboxylic acid) and (6-chloroguanine)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x 6GU: 6-chloroguanine(Non-covalent)

6GU.1: 11 residues within 4Å: Chain A: D.101, N.120, V.122, V.142, M.144, D.190, F.195, G.222, K.226, R.261 Ligands: SO4.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.101, A:N.120, A:N.120, A:K.226 Water bridges: A:G.222 Salt bridges: A:D.101, A:D.190 pi-Stacking: A:F.195 pi-Cation interactions: A:R.261 Halogen bonds: A:G.222 6GU.6: 13 residues within 4Å: Chain B: T.67, D.101, N.120, V.122, V.142, M.144, D.190, F.195, L.220, G.222, K.226, R.261 Ligands: SO4.11 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.101, B:N.120, B:N.120, B:K.226 Water bridges: B:G.222 Salt bridges: B:D.190 pi-Stacking: B:F.195 pi-Cation interactions: B:R.261 Halogen bonds: B:G.222

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: G.194, K.226, R.227 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.194, A:R.227 Water bridges: A:R.227 EDO.9: 5 residues within 4Å: Chain B: G.194, K.226, R.227 Ligands: PEG.7, SO4.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.194, B:R.227 EDO.10: 4 residues within 4Å: Chain B: R.225, E.239, V.242, D.264 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.239, B:E.239, B:D.264, B:D.264

1 x ICB: 1H-indole-2-carboxylic acid(Non-covalent)

ICB.3: 2 residues within 4Å: Chain A: G.36, G.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.36, A:G.37 Water bridges: A:S.34, A:T.38

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: I.25, N.27, R.261, H.263 Ligands: 6GU.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.27 Water bridges: A:N.27, A:R.261 Salt bridges: A:R.261, A:H.263 SO4.5: 3 residues within 4Å: Chain A: R.227, R.241 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.227, A:R.241 SO4.11: 6 residues within 4Å: Chain B: I.25, N.27, R.261, H.263 Ligands: 6GU.6, PEG.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.27 Salt bridges: B:R.261, B:H.263 SO4.12: 3 residues within 4Å: Chain B: R.227, R.241 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.241 Salt bridges: B:R.241

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 7 residues within 4Å: Chain B: S.224, R.225, K.226, P.238, H.263 Ligands: EDO.9, SO4.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.225 Water bridges: B:H.263 PEG.8: 4 residues within 4Å: Chain B: L.80, I.84, P.85, E.88 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oliveira, A.A. et al., Xanthomonas albilineans Dihydropteroate synthase in complex with (indole-2-carboxylic acid) and (6-chloroguanine). To Be Published

Release Date

2020-01-15

Peptides

Dihydropteroate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Dihydropteroate synthase

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