SMTL ID : 6okc.1

Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, FabB, and C12-crypto Acyl Carrier Protein, AcpP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MRJ: N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Covalent)

MRJ.1: 22 residues within 4Å: Chain A: G.106, G.107, A.162, C.163, M.197, F.201, M.204, G.205, V.270, A.271, H.298, T.300, T.302, V.304, G.305, F.390, G.391, F.392 Chain B: A.137, M.138 Chain D: S.37, L.38 12 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: A:A.162, A:F.201, B:A.137, B:M.138 Hydrogen bonds: A:C.163, A:V.270, A:F.392 Water bridges: A:V.270, A:T.300, A:V.304, D:S.37, D:S.37 MRJ.2: 25 residues within 4Å: Chain A: Q.113, V.133, V.134, A.137, M.138 Chain B: G.106, G.107, P.110, A.162, C.163, M.197, E.200, F.201, G.205, V.270, A.271, H.298, T.300, T.302, L.335, F.390, G.391, F.392 Chain C: S.37, L.38 16 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:P.110, B:A.162, B:E.200, B:T.302, B:L.335, A:V.133, A:A.137, A:M.138 Hydrogen bonds: B:C.163, B:V.270, B:T.300, B:T.302, B:F.392 Water bridges: B:V.304, C:S.37, C:S.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mindrebo, J.T. et al., Gating mechanism of elongating beta-ketoacyl-ACP synthases. Nat Commun (2020)

Release Date

2020-04-15

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 1: AB
Acyl carrier protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier-protein] synthase 1

Acyl carrier protein

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