SMTL ID : 6okf.1

Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, FabB, and C16-crypto Acyl Carrier Protein, AcpP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: N.296, S.297, E.342, S.387, N.388 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.296, A:E.342, A:N.388 Water bridges: A:H.298 NA.3: 5 residues within 4Å: Chain B: N.296, S.297, E.342, S.387, N.388 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.342, B:N.388, B:N.388

2 x MRJ: N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Covalent)

MRJ.2: 26 residues within 4Å: Chain A: G.106, G.107, P.110, A.162, C.163, M.197, E.200, F.201, M.204, G.205, V.270, H.298, T.300, T.302, G.305, H.333, L.335, F.390, G.391, F.392 Chain B: Q.113, V.134, A.137, M.138 Chain D: S.37, L.38 13 PLIP interactions: 3 interactions with chain B, 8 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: B:V.134, B:A.137, B:M.138, A:P.110, A:F.201, A:V.270, A:L.335 Hydrogen bonds: A:C.163, A:V.270, A:F.392 Water bridges: A:T.300, D:S.37, D:S.37 MRJ.4: 23 residues within 4Å: Chain A: Q.113, M.138 Chain B: G.106, G.107, P.110, A.162, C.163, M.197, E.200, F.201, M.204, G.205, V.270, P.272, H.298, T.302, H.333, L.335, F.390, G.391, F.392 Chain C: S.37, L.38 10 PLIP interactions: 1 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:M.138, B:P.110, B:A.162, B:F.201, B:F.201, B:L.335, B:F.392 Hydrogen bonds: B:C.163, B:V.270, B:F.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mindrebo, J.T. et al., Gating mechanism of elongating beta-ketoacyl-ACP synthases. Nat Commun (2020)

Release Date

2020-04-22

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 1: AB
Acyl carrier protein: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier-protein] synthase 1

Acyl carrier protein

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