SMTL ID : 6okg.1

Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, FabF, and C16-crypto Acyl Carrier Protein, AcpP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: N.302, A.303, H.304, E.350, C.396, N.397 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.350, A:N.397 Water bridges: A:K.336 NA.3: 6 residues within 4Å: Chain C: N.302, A.303, H.304, E.350, C.396, N.397 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.302, C:E.350, C:N.397 Water bridges: C:K.336

2 x MU4: N-[2-(hexadecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Covalent)

MU4.2: 20 residues within 4Å: Chain A: C.164, F.203, A.206, R.207, A.208, F.230, M.270, T.271, H.304, T.306, T.308, H.341, F.399, G.400, F.401 Chain B: S.37, L.38 Chain C: F.133, P.136, H.146 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:F.203, A:F.203, A:A.206, A:F.230, A:M.270, C:F.133, C:P.136, C:P.136 Hydrogen bonds: A:T.306 Water bridges: A:R.207, A:A.208, A:G.400 MU4.4: 20 residues within 4Å: Chain A: F.133, P.136, H.146 Chain C: C.164, F.203, A.206, R.207, A.208, F.230, M.270, T.271, H.304, T.306, T.308, H.341, F.399, G.400, F.401 Chain D: S.37, L.38 11 PLIP interactions: 8 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:F.203, C:F.203, C:A.206, C:F.230, C:M.270, A:F.133, A:P.136, A:P.136 Water bridges: C:R.207, C:T.308, C:G.400

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mindrebo, J.T. et al., Gating mechanism of elongating beta-ketoacyl-ACP synthases. Nat Commun (2020)

Release Date

2020-04-22

Peptides

3-oxoacyl-[acyl-carrier-protein] synthase 2: AC
Acyl carrier protein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

3-oxoacyl-[acyl-carrier-protein] synthase 2

Acyl carrier protein

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