SMTL ID : 6os0.1

Structure of synthetic nanobody-stabilized angiotensin II type 1 receptor bound to angiotensin II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASP- ARG- VAL- TYR- ILE- HIS- PRO- PHE: Angiotensinogen(Non-covalent)

ASP-ARG-VAL-TYR-ILE-HIS-PRO-PHE.1: 26 residues within 4Å: Chain A: Q.22, D.23, D.24, R.30, W.91, Y.94, Y.99, S.116, L.119, Y.120, R.174, V.186, C.187, A.188, F.189, H.190, Y.191, E.192, S.193, K.206, H.362, D.369, D.387, M.390, P.391, I.394 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:W.91, A:W.91, A:Y.99, A:Y.99, A:L.119, A:Y.120, A:V.186, A:A.188, A:F.189, A:Y.191, A:Y.191, A:Y.191, A:K.206 Hydrogen bonds: A:D.24, A:D.24, A:R.174, A:R.174, A:F.189, A:F.189, A:Y.191, A:Y.191, A:S.193 Salt bridges: A:H.190, A:K.206, A:H.362, A:D.369, A:D.387 pi-Cation interactions: A:K.206

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.181, N.183 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.183

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: H.139, M.141, K.142 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: G.412, K.414, F.415 Chain B: D.108, Y.109, D.110 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wingler, L.M. et al., Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR. Science (2020)

Release Date

2020-02-19

Peptides

Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein: A
Nanobody Nb.AT110i1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Membrane

We predict this structure to be a membrane protein.
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Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein

Nanobody Nb.AT110i1

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