SMTL ID : 6os1.1

Structure of synthetic nanobody-stabilized angiotensin II type 1 receptor bound to TRV023

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAR- ARG- VAL- TYR- LYS- HIS- PRO- ALA: TRV023 peptide(Non-covalent)

SAR-ARG-VAL-TYR-LYS-HIS-PRO-ALA.1: 23 residues within 4Å: Chain A: I.21, Q.22, D.23, D.24, W.91, Y.94, Y.99, V.115, S.116, R.174, C.187, A.188, F.189, H.190, Y.191, K.206, H.362, D.369, I.372, D.387, M.390, P.391, I.394 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.21, A:W.91, A:V.115, A:A.188, A:I.394 Hydrogen bonds: A:D.23, A:D.23, A:D.24, A:Y.99, A:R.174, A:F.189, A:F.189, A:H.190, A:Y.191, A:Y.191, A:D.387 Salt bridges: A:K.206, A:H.362, A:D.369, A:D.387

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.2: 5 residues within 4Å: Chain A: F.73, C.128, I.131, R.147 Ligands: OLC.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.131 Hydrogen bonds: A:D.132 OLC.3: 8 residues within 4Å: Chain A: K.346, M.349, A.350, L.353, F.354, F.357, N.400 Ligands: OLC.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.354, A:F.357 OLC.4: 4 residues within 4Å: Chain A: F.407, F.410, L.411, K.416 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.416, A:K.416 OLC.5: 2 residues within 4Å: Chain A: T.223, W.226 No protein-ligand interaction detected (PLIP) OLC.6: 1 residues within 4Å: Ligands: OLC.3 No protein-ligand interaction detected (PLIP) OLC.7: 10 residues within 4Å: Chain A: F.124, T.127, C.128, T.155, I.158, L.162, F.213, P.214, I.217 Ligands: OLC.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.124, A:T.155, A:I.158, A:L.162, A:F.213, A:P.214, A:I.217

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.8: 4 residues within 4Å: Chain A: I.50, S.54, I.58, L.422 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.58 Hydrogen bonds: A:L.422

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wingler, L.M. et al., Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR. Science (2020)

Release Date

2020-02-19

Peptides

Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein: A
Nanobody Nb.AT110i1_le: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein

Nanobody Nb.AT110i1_le

Related Entries With Identical Sequence