SMTL ID : 6os2.1

Structure of synthetic nanobody-stabilized angiotensin II type 1 receptor bound to TRV026

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAR- ARG- VAL- TYR- TYR- HIS- PRO- NH2: TRV026 peptide(Non-covalent)

SAR-ARG-VAL-TYR-TYR-HIS-PRO-NH2.1: 27 residues within 4Å: Chain A: I.21, Q.22, D.23, D.24, A.28, G.29, R.30, Y.42, W.91, Y.94, Y.99, V.115, R.174, V.186, C.187, A.188, F.189, H.190, Y.191, K.206, D.369, I.372, V.386, D.387, M.390, P.391, I.394 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:I.21, A:D.23, A:W.91, A:W.91, A:Y.99, A:Y.99, A:V.186, A:A.188, A:F.189, A:Y.191 Hydrogen bonds: A:D.23, A:D.24, A:A.28, A:R.174, A:R.174, A:F.189, A:F.189, A:H.190, A:Y.191, A:Y.191, A:K.206, A:D.369, A:D.387 Water bridges: A:Y.99 Salt bridges: A:D.369, A:D.387 pi-Cation interactions: A:R.30

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.181, T.182, N.183 No protein-ligand interaction detected (PLIP)

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.3: 6 residues within 4Å: Chain A: F.73, C.128, I.131, D.132, R.147 Ligands: OLC.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.131 Hydrogen bonds: A:C.128, A:D.132 OLC.4: 9 residues within 4Å: Chain A: K.346, M.349, A.350, L.353, F.354, F.357, I.396, N.400 Ligands: OLC.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.357, A:I.396 OLC.5: 4 residues within 4Å: Chain A: F.407, F.410, L.411, K.416 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.407 Hydrogen bonds: A:K.416, A:K.416 OLC.6: 2 residues within 4Å: Chain A: W.226, K.227 No protein-ligand interaction detected (PLIP) OLC.7: 1 residues within 4Å: Ligands: OLC.4 No protein-ligand interaction detected (PLIP) OLC.8: 11 residues within 4Å: Chain A: F.124, T.127, C.128, T.155, I.158, I.159, L.162, F.213, P.214, I.217 Ligands: OLC.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.124, A:F.124, A:T.155, A:I.158, A:I.159, A:L.162, A:F.213, A:P.214, A:I.217

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.9: 4 residues within 4Å: Chain A: I.50, S.54, L.55, L.422 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wingler, L.M. et al., Angiotensin and biased analogs induce structurally distinct active conformations within a GPCR. Science (2020)

Release Date

2020-02-19

Peptides

Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein: A
Nanobody Nb.AT110i1_le: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Membrane

We predict this structure to be a membrane protein.
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Type-1 angiotensin II receptor,Soluble cytochrome b562 BRIL fusion protein

Nanobody Nb.AT110i1_le

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