SMTL ID : 6otg.1

HIV-1 protease triple mutants V32I, I47V, V82I with GRL-011-11A (a methylamine bis-Tetrahydrofuran P2-Ligand, sulfonamide isostere derivate)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 2 residues within 4Å: Chain A: K.7, R.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.8 FMT.2: 4 residues within 4Å: Chain A: T.12, E.65, A.67, G.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.68 FMT.3: 2 residues within 4Å: Chain A: K.45, M.46 No protein-ligand interaction detected (PLIP) FMT.6: 2 residues within 4Å: Chain B: K.7, R.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.8

1 x 4UY: (3R,3aS,4R,6aR)-4-(methylamino)hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate(Non-covalent)

4UY.4: 25 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.29, D.30, I.32, G.48, G.49, P.81, I.82, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, I.32, V.47, G.48, G.49, I.50, I.82, I.84 24 PLIP interactions: 11 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.32, A:P.81, A:I.82, B:V.47, B:I.50, B:I.82, B:I.84 Hydrogen bonds: A:D.29, A:D.30, A:I.50, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30 Water bridges: A:R.8, A:R.8, B:G.48, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain B: T.12, I.13, K.14, E.65, A.67, G.68 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.12, B:G.68 Water bridges: B:T.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pawar, S. et al., Structural studies of antiviral inhibitor with HIV-1 protease bearing drug resistant substitutions of V32I, I47V and V82I. Biochem.Biophys.Res.Commun. (2019)

Release Date

2019-05-29

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

Related Entries With Identical Sequence