SMTL ID : 6pbe.1

ZINC17988990-bound TRPV5 in nanodiscs

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x O6S: (4-oxo-5-phenyl-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)methyl 3-(3-oxo-2,3-dihydro-4H-1,4-benzoxazin-4-yl)propanoate(Non-covalent)

O6S.1: 14 residues within 4Å: Chain A: E.294, S.298, L.402, E.403, D.406, Y.415, L.421, H.426, I.429, Y.467, F.468, A.599, M.603, R.606 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.294, A:L.421, A:I.429, A:Y.467, A:F.468 Hydrogen bonds: A:D.406, A:Y.415, A:Y.467, A:R.606 Salt bridges: A:K.607 pi-Stacking: A:Y.415, A:Y.467 O6S.2: 6 residues within 4Å: Chain A: F.487, L.490, M.491, C.494, W.495 Chain C: I.565 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.565, C:I.565, A:W.495 O6S.3: 14 residues within 4Å: Chain B: E.294, S.298, L.402, E.403, D.406, Y.415, L.421, H.426, I.429, Y.467, F.468, A.599, M.603, R.606 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:E.294, B:L.421, B:I.429, B:Y.467, B:F.468 Hydrogen bonds: B:D.406, B:Y.415, B:Y.467, B:R.606 Salt bridges: B:K.607 pi-Stacking: B:Y.415, B:Y.467 O6S.4: 6 residues within 4Å: Chain A: I.565 Chain B: F.487, L.490, M.491, C.494, W.495 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.495, A:I.565, A:I.565 O6S.5: 14 residues within 4Å: Chain C: E.294, S.298, L.402, E.403, D.406, Y.415, L.421, H.426, I.429, Y.467, F.468, A.599, M.603, R.606 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:E.294, C:L.421, C:I.429, C:Y.467, C:F.468 Hydrogen bonds: C:D.406, C:Y.415, C:Y.467, C:R.606 Salt bridges: C:K.607 pi-Stacking: C:Y.415, C:Y.467 O6S.6: 6 residues within 4Å: Chain C: F.487, L.490, M.491, C.494, W.495 Chain D: I.565 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:I.565, D:I.565, C:W.495 O6S.7: 14 residues within 4Å: Chain D: E.294, S.298, L.402, E.403, D.406, Y.415, L.421, H.426, I.429, Y.467, F.468, A.599, M.603, R.606 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:E.294, D:L.421, D:I.429, D:Y.467, D:F.468 Hydrogen bonds: D:D.406, D:Y.415, D:Y.467, D:R.606 Salt bridges: D:K.607 pi-Stacking: D:Y.415, D:Y.467 O6S.8: 6 residues within 4Å: Chain B: I.565 Chain D: F.487, L.490, M.491, C.494, W.495 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:I.565, B:I.565, D:W.495

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hughes, T.E. et al., Structure-based characterization of novel TRPV5 inhibitors. Elife (2019)

Release Date

2019-11-06

Peptides

Transient receptor potential cation channel subfamily V member 5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transient receptor potential cation channel subfamily V member 5

Related Entries With Identical Sequence