SMTL ID : 6pfl.1

Crystal structure of Human HUWE1 WWE domain in complex with ADPR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 11 residues within 4Å: Chain A: W.10, Y.21, A.44, R.47, Y.49, Q.58, N.60, T.63, N.65, R.67 Ligands: UNX.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.49, A:Y.49, A:Q.58, A:Q.58, A:N.60, A:N.65, A:R.67 Salt bridges: A:R.67 pi-Stacking: A:W.10, A:W.10 APR.3: 10 residues within 4Å: Chain B: W.10, Y.21, A.44, R.47, Y.49, Q.58, N.60, T.63, N.65, R.67 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:R.47, B:Y.49, B:Q.58, B:Q.58, B:N.60, B:T.63, B:T.63, B:N.65, B:R.67 Water bridges: B:N.60 Salt bridges: B:R.67 pi-Stacking: B:W.10, B:W.10 APR.6: 11 residues within 4Å: Chain C: W.10, Y.21, A.44, R.47, Y.49, Q.58, N.60, T.63, N.65, R.67 Ligands: UNX.7 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Y.49, C:Q.58, C:Q.58, C:N.60, C:T.63, C:N.65, C:R.67 Salt bridges: C:R.67 pi-Stacking: C:W.10, C:W.10 APR.8: 10 residues within 4Å: Chain D: W.10, Y.21, A.44, R.47, Y.49, Q.58, N.60, T.63, N.65, R.67 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:R.47, D:Y.49, D:Q.58, D:Q.58, D:N.60, D:T.63, D:N.65, D:R.67 Water bridges: D:N.60 Salt bridges: D:R.67 pi-Stacking: D:W.10, D:W.10

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 4 residues within 4Å: Chain A: W.10, Y.21, A.44 Ligands: APR.1 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain B: L.74, R.75 Chain D: R.75 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain B: N.65, R.66 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain C: W.10, Y.21, A.44 Ligands: APR.6 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain B: R.75 Chain D: L.74, R.75 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain D: N.65, R.66 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halabelian, L. et al., Crystal structure of Human HUWE1 WWE domain in complex with ADPR. to be published

Release Date

2019-07-24

Peptides

E3 ubiquitin-protein ligase HUWE1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E3 ubiquitin-protein ligase HUWE1

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