SMTL ID : 6pyr.1

Human PI3Kdelta in complex with Compound 2-10 ((3S)-3-benzyl-3-methyl-5-[5-(2-methylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-1,3-dihydro-2H-indol-2-one)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-1-1-mer

Ligands

1 x P5J: (3S)-3-benzyl-3-methyl-5-[5-(2-methylpyrimidin-5-yl)pyrazolo[1,5-a]pyrimidin-3-yl]-1,3-dihydro-2H-indol-2-one(Non-covalent)

P5J.1: 15 residues within 4Å: Chain A: F.735, M.736, W.744, I.761, K.763, Y.797, I.809, E.810, V.812, S.815, D.816, N.820, M.884, I.894, D.895 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.744, A:I.809, A:D.895 Hydrogen bonds: A:Y.797, A:V.812, A:N.820, A:D.895 pi-Stacking: A:W.744, A:Y.797

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fradera, X. et al., Design of selective PI3K delta inhibitors using an iterative scaffold-hopping workflow. Bioorg.Med.Chem.Lett. (2019)

Release Date

2019-08-28

Peptides

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform: A
Phosphatidylinositol 3-kinase regulatory subunit alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform

Phosphatidylinositol 3-kinase regulatory subunit alpha

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