SMTL ID : 7lm2.1

HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 3C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

hetero-1-1-mer

Ligands

1 x Y5Y: cyclopropyl[(3S)-3-{[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]amino}pyrrolidin-1-yl]methanone(Non-covalent)

Y5Y.1: 15 residues within 4Å: Chain A: T.739, M.741, W.749, I.766, D.776, Y.802, I.814, E.815, V.817, S.820, T.822, M.889, F.897, I.899, D.900 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.739, A:W.749, A:Y.802, A:I.814, A:V.817, A:T.822, A:F.897, A:I.899, A:I.899 Hydrogen bonds: A:Y.802, A:V.817, A:D.900 pi-Stacking: A:W.749

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: V.434, D.436, E.440 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.440

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: M.799, T.800, P.801, Y.802 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.799

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Methot, J.L. et al., Projected Dose Optimization of Amino- and Hydroxypyrrolidine Purine PI3K delta Immunomodulators. J.Med.Chem. (2021)

Release Date

2021-04-21

Peptides

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform: A
Phosphatidylinositol 3-kinase regulatory subunit alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform

Phosphatidylinositol 3-kinase regulatory subunit alpha

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