SMTL ID : 7jis.1

HUMAN PI3KDELTA IN COMPLEX WITH COMPOUND 2F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-1-1-mer

Ligands

1 x VBS: (3S)-3-benzyl-5-[9-ethyl-8-(2-methylpyrimidin-5-yl)-9H-purin-6-yl]-3-methyl-1,3-dihydro-2H-indol-2-one(Non-covalent)

VBS.1: 16 residues within 4Å: Chain A: F.735, M.736, W.744, I.761, K.763, Y.797, I.809, E.810, V.812, S.815, D.816, T.817, N.820, M.884, I.894, D.895 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.761, A:Y.797, A:I.809, A:V.812, A:T.817 Hydrogen bonds: A:Y.797, A:V.812, A:N.820, A:D.895 pi-Stacking: A:W.744, A:W.744

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Methot, J.L. et al., Optimization of Versatile Oxindoles as Selective PI3K delta Inhibitors. Acs Med.Chem.Lett. (2020)

Release Date

2020-12-30

Peptides

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform: A
Phosphatidylinositol 3-kinase regulatory subunit alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform

Phosphatidylinositol 3-kinase regulatory subunit alpha

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