SMTL ID : 6q23.1

Crystal structure of human 1G01 Fab in complex with influenza virus neuraminidase from A/California/04/2009 (H1N1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

hetero-4-4-4-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.12 Ligands: NAG.4 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: N.159, Q.232 Ligands: NAG.1 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: A.10, N.12 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.12 NAG.8: 1 residues within 4Å: Chain B: N.159 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain C: K.67, N.70 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:K.67 NAG.10: 1 residues within 4Å: Chain C: N.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.12 NAG.13: 2 residues within 4Å: Chain C: K.8, N.159 No protein-ligand interaction detected (PLIP) NAG.15: 2 residues within 4Å: Chain D: A.10, N.12 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.12

9 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.218, G.222, D.248, G.266, A.267, N.268 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.218, A:G.222, A:G.266, A:N.268 CA.3: 3 residues within 4Å: Chain A: D.300, D.308, N.310 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.300, A:D.300, A:N.310 CA.6: 6 residues within 4Å: Chain B: D.218, G.222, D.248, G.266, N.268, G.269 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.218, B:G.222, B:D.248, B:G.266, B:N.268 CA.7: 4 residues within 4Å: Chain B: D.300, N.302, D.308, N.310 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.300, B:D.300, B:D.308, B:D.308, B:N.310 CA.11: 7 residues within 4Å: Chain C: D.218, G.222, D.248, G.266, A.267, N.268, G.269 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.218, C:G.222, C:D.248, C:G.266, C:N.268 CA.12: 3 residues within 4Å: Chain C: D.300, D.308, N.310 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.300, C:D.300, C:D.308 CA.14: 2 residues within 4Å: Chain A: D.37 Chain D: D.37 No protein-ligand interaction detected (PLIP) CA.16: 7 residues within 4Å: Chain D: D.218, G.222, D.248, G.266, A.267, N.268, G.269 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.218, D:G.222, D:D.248, D:G.266, D:N.268 CA.17: 4 residues within 4Å: Chain D: D.300, N.302, D.308, N.310 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.300, D:D.308, D:N.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stadlbauer, D. et al., Broadly protective human antibodies that target the active site of influenza virus neuraminidase. Science (2019)

Release Date

2019-10-23

Peptides

Neuraminidase: ABCD
1G01 Fab IgG1 heavy chain: EGIK
1G01 Fab kappa light chain: FHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

D
D

E
H

G
E

I
G

K
J

F
L

H
F

J
I

L
K

Neuraminidase

1G01 Fab IgG1 heavy chain

1G01 Fab kappa light chain

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