SMTL ID : 6q9q.4 (3 other biounits)

HDMX (14-111; C17S) COMPLEXED WITH COMPOUND 13 AT 2.1A; Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HUE: 6-chloranyl-3-[3-[(1~{S})-1-(4-chlorophenyl)ethyl]-5-phenyl-imidazol-4-yl]-~{N}-[2-(4-cyclohexylpiperazin-1-yl)ethyl]-1~{H}-indole-2-carboxamide(Non-covalent)

HUE.1: 10 residues within 4Å: Chain A: M.42, L.45, G.46, I.49, M.50, Y.55, Q.60, V.81, P.84, L.87 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.45, A:I.49, A:I.49, A:Y.55, A:Y.55, A:Y.55, A:V.81 Hydrogen bonds: A:M.42, A:G.46

1 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.2: 4 residues within 4Å: Chain A: L.20, P.21, K.24, L.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.24

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: H.43, Y.44, Q.47 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.47 Salt bridges: A:H.43 SO4.4: 6 residues within 4Å: Chain A: K.24, I.25, A.28, Y.48, K.52, L.69 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.28, A:L.69 Salt bridges: A:K.52 SO4.5: 3 residues within 4Å: Chain A: G.33, E.34, M.35 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.34, A:M.35, A:M.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallen, J. et al., Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes. Chemmedchem (2019)

Release Date

2019-05-15

Peptides

Protein Mdm4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Protein Mdm4

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