SMTL ID : 6q9w.1 (1 other biounit)

X-ray structure of compound 15 bound to HdmX: Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x HRT: (4~{S})-4-(4-chlorophenyl)-5-[(1~{S})-1-(3-chlorophenyl)ethyl]-2-(2,4-dimethoxypyrimidin-5-yl)-3-propan-2-yl-4~{H}-pyrrolo[3,4-d]imidazol-6-one(Non-covalent)

HRT.1: 17 residues within 4Å: Chain A: M.42, L.45, G.46, I.49, M.50, Y.55, Q.57, Q.60, H.61, M.62, V.63, F.79, V.81, P.84, L.87, Y.88 Ligands: O4B.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.49, A:I.49, A:V.81, A:P.84, A:Y.88

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.33, E.34, M.35 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.34, A:M.35

2 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.3: 3 residues within 4Å: Chain A: L.20, P.21, K.24 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.24 O4B.4: 4 residues within 4Å: Chain A: Q.60, V.81, K.82 Ligands: HRT.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallen, J. et al., Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes. Chemmedchem (2019)

Release Date

2019-05-15

Peptides

Protein Mdm4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Mdm4

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