SMTL ID : 6q9s.1 (2 other biounits)

HDMX (14-111; C17S) COMPLEXED WITH COMPOUND 14 AT 2.4A: Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x HRN: 3-[[6-chloranyl-3-[3-[(1~{S})-1-(2,4-dichlorophenyl)ethyl]-5-phenyl-imidazol-4-yl]-1~{H}-indol-2-yl]carbonylamino]-4-[4-(2-oxidanylidene-1,3-oxazinan-3-yl)piperidin-1-yl]benzoic acid(Non-covalent)

HRN.1: 16 residues within 4Å: Chain A: K.39, M.42, H.43, L.45, G.46, I.49, M.50, Y.55, Q.60, V.81, P.84, L.87, Y.88 Ligands: O4B.2, O4B.4, NA.6 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.45, A:I.49, A:I.49, A:Y.55, A:Y.55 Hydrogen bonds: A:M.42, A:G.46 Water bridges: A:K.39 Salt bridges: A:K.39, A:H.43

4 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.2: 3 residues within 4Å: Chain A: V.81 Ligands: HRN.1, NA.6 No protein-ligand interaction detected (PLIP) O4B.3: 8 residues within 4Å: Chain A: Q.15, V.16, V.38, Y.88, L.91, R.92, L.95, T.97 No protein-ligand interaction detected (PLIP) O4B.4: 4 residues within 4Å: Chain A: H.43, Q.47, M.50 Ligands: HRN.1 No protein-ligand interaction detected (PLIP) O4B.8: 6 residues within 4Å: Chain A: K.52, Q.53, L.54, Y.64, G.66 Ligands: NA.7 No protein-ligand interaction detected (PLIP)

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: N.14, Q.32, G.33, E.34, M.35 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.14, A:Q.32, A:E.34, A:M.35

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Ligands: HRN.1, O4B.2 No protein-ligand interaction detected (PLIP) NA.7: 4 residues within 4Å: Chain A: K.52, Q.53, L.54 Ligands: O4B.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kallen, J. et al., Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes. Chemmedchem (2019)

Release Date

2019-05-15

Peptides

Protein Mdm4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein Mdm4

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