SMTL ID : 6qas.1 (1 other biounit)

Crystal structure of ULK1 in complexed with PF-03814735

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: N.100, G.155, R.156 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.100, A:R.156 Salt bridges: A:R.156 SO4.2: 5 residues within 4Å: Chain A: M.111, T.113, L.114, S.115, T.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.115 Water bridges: A:Y.107, A:T.118 SO4.3: 3 residues within 4Å: Chain A: Q.200, K.241, R.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.200 Salt bridges: A:K.241, A:R.265

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 7 residues within 4Å: Chain A: G.29, A.30, D.142, K.144, D.169, F.172 Ligands: EDO.16 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.30, A:K.144 Water bridges: A:G.29, A:D.169, A:D.169, A:D.169 Salt bridges: A:K.144, A:K.144

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: L.45, Y.83, E.97, Y.98 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.46, A:E.46, A:E.46, A:Y.98 GOL.6: 7 residues within 4Å: Chain A: E.77, E.97, S.151, P.153, R.164, K.166 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.77, A:K.166 Water bridges: A:S.151 GOL.7: 1 residues within 4Å: Chain A: E.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.77 GOL.8: 6 residues within 4Å: Chain A: G.101, Y.107, L.150, N.152, R.156, I.163 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.101 GOL.9: 2 residues within 4Å: Chain A: S.115, E.116 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.116 Water bridges: A:E.116, A:E.116, A:E.116, A:E.116, A:D.117, A:E.250 GOL.10: 3 residues within 4Å: Chain A: S.252, A.253, P.254 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.253 Water bridges: A:S.252, A:S.252

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 5 residues within 4Å: Chain A: K.54, K.55, N.56, L.57, A.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.54, A:L.57, A:A.58 EDO.12: 3 residues within 4Å: Chain A: K.66, K.69 Ligands: EDO.17 No protein-ligand interaction detected (PLIP) EDO.13: 3 residues within 4Å: Chain A: K.205, H.267, K.268 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.205 EDO.14: 3 residues within 4Å: Chain A: H.76, G.128, R.131 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.76 Water bridges: A:R.131, A:R.131 EDO.15: 4 residues within 4Å: Chain A: G.137, L.176, Q.177, S.178 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.137 Water bridges: A:Q.177, A:S.178, A:G.204 EDO.16: 4 residues within 4Å: Chain A: K.144, G.187, S.188 Ligands: CIT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.187 Water bridges: A:K.144, A:K.144 EDO.17: 5 residues within 4Å: Chain A: K.66, K.69, R.174, Y.175 Ligands: EDO.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.66, A:K.69, A:Y.175 Water bridges: A:R.174, A:Y.175

1 x 34W: N-{2-[(1S,4R)-6-{[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1,2,3,4-tetrahydro-1,4-epiminonaphthalen-9-yl]-2-oxoethyl}acetamide(Non-covalent)

34W.18: 13 residues within 4Å: Chain A: I.26, G.27, V.34, K.36, A.48, V.80, M.96, E.97, Y.98, C.99, G.102, L.149, A.168 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.34, A:A.48, A:Y.98, A:L.149 Hydrogen bonds: A:K.36, A:C.99, A:C.99 Water bridges: A:R.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Conservation of structure, function and inhibitor binding in UNC-51-like kinase 1 and 2 (ULK1/2). Biochem.J. (2019)

Release Date

2019-02-27

Peptides

Serine/threonine-protein kinase ULK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase ULK1

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