- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CIT: CITRIC ACID(Non-functional Binders)
CIT.4: 8 residues within 4Å:- Chain A: G.29, A.30, F.31, D.142, K.144, D.169, F.172
- Ligands: GOL.6
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.30, A:F.31
- Hydrogen bonds: A:A.30, A:K.144
- Water bridges: A:G.29, A:K.50, A:K.50, A:N.147, A:N.147
- Salt bridges: A:K.144, A:K.144
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 3 residues within 4Å:- Chain A: S.115, E.116, D.117
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.116, A:D.117, A:D.117
- Water bridges: A:S.115, A:E.116
GOL.6: 9 residues within 4Å:- Chain A: F.31, A.32, K.50, L.63, E.67, D.169, F.170, G.171
- Ligands: CIT.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.50, A:K.50, A:E.67, A:D.169, A:G.171
GOL.7: 6 residues within 4Å:- Chain A: H.134, G.137, I.138, I.139, L.176, F.273
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.134, A:L.176
- Water bridges: A:I.138, A:G.204
GOL.8: 4 residues within 4Å:- Chain A: Q.200, E.238, K.241, R.265
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.200, A:E.238, A:R.265, A:R.265
GOL.9: 4 residues within 4Å:- Chain A: H.134, D.272, F.273, D.274
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.273, A:D.274
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 4 residues within 4Å:- Chain A: K.36, E.46, Y.98, N.100
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.36, A:Y.98, A:Y.98
EDO.11: 3 residues within 4Å:- Chain A: L.114, S.115, T.118
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.115
- Water bridges: A:T.118
EDO.12: 6 residues within 4Å:- Chain A: M.190, Y.191, Q.217, K.222, A.223, Q.226
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.217, A:A.223, A:Q.226
- Water bridges: A:Q.146, A:Q.146, A:Y.191
EDO.13: 5 residues within 4Å:- Chain A: K.54, K.55, N.56, L.57, A.58
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.55, A:L.57, A:A.58
- Water bridges: A:K.59
EDO.14: 3 residues within 4Å:- Chain A: P.248, R.249, E.250
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.249
- Water bridges: A:I.247, A:E.250, A:E.250
- 2 x 34W: N-{2-[(1S,4R)-6-{[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1,2,3,4-tetrahydro-1,4-epiminonaphthalen-9-yl]-2-oxoethyl}acetamide(Non-covalent)
34W.15: 14 residues within 4Å:- Chain A: I.26, G.27, V.34, K.36, A.48, V.80, M.96, E.97, Y.98, C.99, G.102, L.149, A.168
- Ligands: 34W.16
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:I.26, A:V.34, A:V.34, A:A.48, A:Y.98, A:L.149
- Hydrogen bonds: A:C.99, A:C.99
34W.16: 11 residues within 4Å:- Chain A: G.101, G.102, D.103, D.106, Y.107, A.110, M.111, L.150, R.157, A.158
- Ligands: 34W.15
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Y.107, A:Y.107, A:L.150, A:A.158
- Hydrogen bonds: A:G.101, A:R.157, A:A.158
- Halogen bonds: A:D.103
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaikuad, A. et al., Conservation of structure, function and inhibitor binding in UNC-51-like kinase 1 and 2 (ULK1/2). Biochem.J. (2019)
- Release Date
- 2019-02-27
- Peptides
- Serine/threonine-protein kinase ULK1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CIT: CITRIC ACID(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x 34W: N-{2-[(1S,4R)-6-{[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino}-1,2,3,4-tetrahydro-1,4-epiminonaphthalen-9-yl]-2-oxoethyl}acetamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chaikuad, A. et al., Conservation of structure, function and inhibitor binding in UNC-51-like kinase 1 and 2 (ULK1/2). Biochem.J. (2019)
- Release Date
- 2019-02-27
- Peptides
- Serine/threonine-protein kinase ULK1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B