SMTL ID : 6qj5.1

X-ray structure of PPARgamma LBD with the ligand NV1380

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x H8R: (2~{S})-3-methyl-2-[(4-octoxyphenyl)carbonylamino]butanoic acid(Non-covalent)

H8R.1: 15 residues within 4Å: Chain A: C.112, Q.113, R.115, S.116, H.150, Y.154, L.157, I.168, S.169, E.170, M.191, H.276, L.280, L.296, Y.300 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Q.113, A:I.168, A:I.168, A:L.280, A:L.296 Hydrogen bonds: A:S.116, A:S.116, A:Y.154, A:Y.154, A:Y.300 Salt bridges: A:H.150, A:H.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peiretti, F. et al., A Novel N-Substituted Valine Derivative with Unique Peroxisome Proliferator-Activated Receptor gamma Binding Properties and Biological Activities. J.Med.Chem. (2020)

Release Date

2020-02-05

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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