SMTL ID : 6qxv.1

Pink beam serial crystallography: Proteinase K, 1 us exposure, 1585 patterns merged (2 chips)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: A.172, E.174, P.175, V.177, T.179, V.198, D.200 Ligands: CL.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.174, A:V.177, A:T.179 CA.13: 9 residues within 4Å: Chain A: V.37, D.39, T.40, G.41, I.42, G.70, G.92, V.93, K.94 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.37

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.20, S.21, T.22, Y.24 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.21, A:S.21, A:T.22, A:T.22 Water bridges: A:Y.24, A:Y.24 SO4.3: 2 residues within 4Å: Chain A: S.262, N.263 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.263 Water bridges: A:S.262, A:I.264 SO4.4: 3 residues within 4Å: Chain A: P.7, W.8, R.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.8 Salt bridges: A:R.185 SO4.5: 3 residues within 4Å: Chain A: S.138, S.139, S.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.138, A:S.139, A:S.140, A:S.140 SO4.6: 5 residues within 4Å: Chain A: A.1, Y.25, D.26, E.27, Y.277 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.1, A:E.27, A:Y.277 SO4.7: 6 residues within 4Å: Chain A: D.184, R.188, S.190, S.191, F.192, T.206 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.184, A:R.188, A:S.190, A:S.191, A:T.206 Water bridges: A:R.188, A:R.188, A:R.188 SO4.8: 3 residues within 4Å: Chain A: A.164, D.165, Y.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.165, A:Y.195 Water bridges: A:D.165, A:D.165, A:D.165 SO4.9: 7 residues within 4Å: Chain A: H.69, N.161, S.221, G.222, T.223, S.224, M.225 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.161, A:S.221, A:S.224, A:S.224, A:S.224 Salt bridges: A:H.69 SO4.10: 2 residues within 4Å: Chain A: C.249, R.250 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.247, A:R.250 Salt bridges: A:R.250 SO4.11: 3 residues within 4Å: Chain A: D.207, I.220, S.221 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.207, A:S.219, A:S.221, A:S.221 Water bridges: A:S.221 SO4.12: 4 residues within 4Å: Chain A: P.175, S.197, V.198 Ligands: CL.16 4 PLIP interactions: 4 interactions with chain A Water bridges: A:P.175, A:S.197, A:V.198, A:D.200

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.14: 8 residues within 4Å: Chain A: N.257, K.258, G.259, D.260, L.261, N.270, L.271, L.272 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain A: V.37, C.73, S.130, S.132, P.228 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain A: P.175, V.177, C.178, D.200 Ligands: CA.1, SO4.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolstikova, A. et al., 1 kHz fixed-target serial crystallography using a multilayer monochromator and an integrating pixel detector. Iucrj (2019)

Release Date

2019-09-25

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proteinase K

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