SMTL ID : 6rlg.2 (1 other biounit)

Crystal structure of LdtMt2 from Mycobacterium tuberculosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 4 residues within 4Å: Chain A: S.53, D.55, L.57, R.58 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 5 residues within 4Å: Chain A: E.160, H.161, F.162, I.238, W.341 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.160, A:F.162

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: V.22, D.23, A.24, P.25, E.63, Q.64, L.65, Y.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.65, A:L.65 EDO.4: 10 residues within 4Å: Chain A: S.12, V.13, V.20, T.21, V.22, D.23, A.24, P.25, V.26, S.27 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:T.21, A:T.21, A:T.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Munnik, M. et al., Targeting the Mycobacterium tuberculosis transpeptidase LdtMt2with cysteine-reactive inhibitors including ebselen. Chem.Commun.(Camb.) (2019)

Release Date

2019-08-14

Peptides

L,D-transpeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

L,D-transpeptidase 2

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