SMTL ID : 6rrm.2 (1 other biounit)

Crystal structure of LdtMt2 from Mycobacterium tuberculosis bound to Ebselen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.42, V.48, E.63, Q.64, R.69, Y.71 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.42, A:Q.64, A:R.69, A:Y.71 Water bridges: A:R.69 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.2: 2 residues within 4Å: Chain A: A.118, R.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.156

1 x 9JT: N-phenyl-2-selanylbenzamide(Non-covalent)

9JT.3: 9 residues within 4Å: Chain A: M.250, Y.255, Y.265, S.278, G.279, F.281, H.283, H.299, C.301 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.250, A:Y.255, A:Y.265, A:Y.265 Water bridges: A:G.279, A:G.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Munnik, M. et al., Targeting the Mycobacterium tuberculosis transpeptidase LdtMt2with cysteine-reactive inhibitors including ebselen. Chem.Commun.(Camb.) (2019)

Release Date

2019-08-14

Peptides

L,D-transpeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

L,D-transpeptidase 2

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