SMTL ID : 6rrm.1 (1 other biounit)

Crystal structure of LdtMt2 from Mycobacterium tuberculosis bound to Ebselen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.1: 2 residues within 4Å: Chain A: A.118, R.156 No protein-ligand interaction detected (PLIP) NH4.3: 1 residues within 4Å: Chain A: I.137 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.137 Water bridges: A:I.135

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: H.161, F.162, I.238, W.341 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.161, A:F.162 Water bridges: A:F.162

1 x 9JT: N-phenyl-2-selanylbenzamide(Non-covalent)

9JT.4: 11 residues within 4Å: Chain A: M.250, P.262, N.263, G.264, Y.265, T.267, V.269, H.283, W.287, H.299, C.301 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.265, A:Y.265, A:T.267, A:V.269, A:W.287, A:H.299 pi-Stacking: A:H.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Munnik, M. et al., Targeting the Mycobacterium tuberculosis transpeptidase LdtMt2with cysteine-reactive inhibitors including ebselen. Chem.Commun.(Camb.) (2019)

Release Date

2019-08-14

Peptides

L,D-transpeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L,D-transpeptidase 2

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