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SMTL ID : 6ruh.1

Ni-substituted alpha-Keggin bound to Proteinase K solved by MR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x WNI: Ni-substituted alpha-Keggin(Covalent)(Non-covalent)

WNI.1:	6 residues within 4Å: Chain A: D.184, R.185, Y.186, R.188, T.206, D.207 8 PLIP interactions: 8 interactions with chain A, Hydrogen bonds: A:R.185, A:R.185, A:R.188 Water bridges: A:D.184, A:R.185, A:Y.186, A:S.191 Metal complexes: A:D.207
WNI.2:	8 residues within 4Å: Chain A: I.42, E.43, A.44, S.45, Q.54, M.55, S.63, R.64 15 PLIP interactions: 12 interactions with chain A, 3 Ligand-Water interactions, Hydrogen bonds: A:A.44, A:S.45, A:S.45, A:M.55, A:S.63 Water bridges: A:S.62, A:S.62, A:S.63, A:S.63, A:D.65, A:D.65, A:D.65 Metal complexes: H₂O.1, H₂O.1, H₂O.3

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3:

4 residues within 4Å:

Chain A: P.7, W.8, R.185, D.207

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:W.8, A:D.207
Water bridges: A:A.6, A:R.185
Salt bridges: A:R.185

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Breibeck, J. et al., Transition metal-substituted Keggin polyoxotungstates enabling covalent attachment to proteinase K upon co-crystallization. Chem.Commun.(Camb.) (2019)

Release Date

2019-09-18

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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