SMTL ID : 6sfe.1

CRYSTAL STRUCTURE OF DHQ1 FROM SALMONELLA TYPHI COVALENTLY MODIFIED BY COMPOUND 7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.08 Å

Oligo State

homo-dimer

Ligands

2 x L9Z: (1~{S},3~{S},4~{S},5~{R})-3-(aminomethyl)-3,4,5-tris(hydroxyl)cyclohexane-1-carboxylic acid(Covalent)

L9Z.1: 13 residues within 4Å: Chain A: S.21, E.46, R.48, T.80, R.82, H.143, K.170, M.203, R.213, F.225, S.232, A.233, Q.236 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:K.170, A:F.225, A:F.225, A:A.233 Hydrogen bonds: A:S.21, A:R.48, A:R.82, A:H.143, A:K.170, A:S.232, A:S.232, A:Q.236 Water bridges: A:E.46 Salt bridges: A:R.213 L9Z.2: 13 residues within 4Å: Chain B: S.21, E.46, R.48, T.80, R.82, H.143, K.170, M.203, R.213, F.225, S.232, A.233, Q.236 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:K.170, B:F.225, B:F.225, B:A.233 Hydrogen bonds: B:S.21, B:R.48, B:R.82, B:H.143, B:K.170, B:S.232, B:S.232, B:Q.236 Water bridges: B:D.114 Salt bridges: B:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lence, E. et al., Self-Immolation of a Bacterial Dehydratase Enzyme by its Epoxide Product. Chemistry (2020)

Release Date

2020-04-15

Peptides

3-dehydroquinate dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-dehydroquinate dehydratase

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