SMTL ID : 6sh1.1 (1 other biounit)

Crystal structure of substrate-free human neprilysin E584D.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.91, S.93, A.94, R.98, D.451 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91 Water bridges: A:N.91 NAG.2: 6 residues within 4Å: Chain A: T.129, K.132, N.271, N.274, E.275, S.278 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.274 Hydrogen bonds: A:N.271, A:E.275 NAG.3: 2 residues within 4Å: Chain A: N.231, K.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.300 NAG.4: 3 residues within 4Å: Chain A: Y.570, G.573, N.574 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.574

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 10 residues within 4Å: Chain A: A.94, I.95, R.98, P.102, S.328, L.329, E.452, Y.453, F.454, E.455 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.328, A:Y.453, A:F.454

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.530, A:H.534, A:E.593, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moss, S. et al., Crystal structure of peptide-bound neprilysin reveals key binding interactions. Febs Lett. (2020)

Release Date

2019-09-25

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Neprilysin

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