SMTL ID : 6sh1.2 (1 other biounit)

Crystal structure of substrate-free human neprilysin E584D.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.91, S.93, A.94, D.451 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.91 Water bridges: A:N.91 NAG.2: 2 residues within 4Å: Chain A: N.231, K.300 No protein-ligand interaction detected (PLIP) NAG.3: 5 residues within 4Å: Chain A: T.129, K.132, N.271, N.274, E.275 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.274, A:E.275 Hydrogen bonds: A:E.275, A:E.275 NAG.4: 3 residues within 4Å: Chain A: Y.570, G.573, N.574 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.574

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 8 residues within 4Å: Chain A: R.337, N.338, R.341, K.342, T.347, S.349, E.350, T.351 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.337, A:N.338, A:N.338, A:R.341 EDO.6: 7 residues within 4Å: Chain A: F.194, M.323, V.326, R.337, F.340, R.341, Y.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.337, A:R.341

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.530, A:H.534, A:E.593, A:E.593, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moss, S. et al., Crystal structure of peptide-bound neprilysin reveals key binding interactions. Febs Lett. (2020)

Release Date

2019-09-25

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
CCC

Neprilysin

Related Entries With Identical Sequence