SMTL ID : 6sh2.1

Crystal structure of human neprilysin E584D in complex with C-type natriuretic peptide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ALA- ALA- ALA- ALA: C-type natriuretic peptide fragment (CNP)(Non-covalent)

ALA-ALA-ALA-ALA.1: 17 residues within 4Å: Chain A: R.49, F.53, R.57, N.489, A.490, F.491, Y.492, V.527, H.530, D.531, H.534, E.593, W.640, D.656, H.658, R.664 Ligands: ZN.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.53 Hydrogen bonds: A:R.49, A:N.489, A:N.489, A:N.489, A:A.490, A:H.530, A:H.534, A:H.658, A:R.664, A:R.664

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.91, S.93, A.94, D.451 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.91 NAG.3: 5 residues within 4Å: Chain A: T.129, N.271, N.274, E.275, S.278 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.274 NAG.4: 2 residues within 4Å: Chain A: N.231, K.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.300 NAG.5: 4 residues within 4Å: Chain A: V.569, Y.570, G.573, N.574 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.570 Hydrogen bonds: A:N.574

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 6 residues within 4Å: Chain A: H.530, H.534, E.593, H.658 Ligands: ALA-ALA-ALA-ALA.1, ALA-ALA-ALA-ALA.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.530, A:H.534, A:E.593, A:E.593

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 6 residues within 4Å: Chain A: V.145, L.146, P.168, I.229, L.316, R.320 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: M.323, R.337, F.340, R.341 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moss, S. et al., Crystal structure of peptide-bound neprilysin reveals key binding interactions. Febs Lett. (2020)

Release Date

2019-09-25

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Neprilysin

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