SMTL ID : 6sjm.1

Crystal structure of the Retinoic Acid Receptor alpha in complex with compound 24 (JP175)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-2-2-mer

Ligands

2 x LFZ: 2-[4-[3,5-bis(trifluoromethyl)phenyl]phenyl]ethanoic acid(Non-covalent)

LFZ.1: 16 residues within 4Å: Chain A: I.42, A.45, A.46, Q.49, L.83, F.87, R.90, I.98, L.100, A.101, I.119, F.120, C.206, H.209, L.210, F.213 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.42, A:Q.49, A:F.87, A:F.87, A:F.87, A:L.100 Hydrogen bonds: A:L.83, A:A.101 Salt bridges: A:R.90 LFZ.2: 16 residues within 4Å: Chain C: I.42, A.45, A.46, Q.49, L.83, F.87, R.90, I.98, L.100, A.101, I.119, F.120, C.206, H.209, L.210, F.213 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:I.42, C:Q.49, C:F.87, C:F.87, C:F.87, C:L.100 Hydrogen bonds: C:L.83, C:A.101 Salt bridges: C:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pollinger, J. et al., A Novel Biphenyl-based Chemotype of Retinoid X Receptor Ligands Enables Subtype and Heterodimer Preferences. Acs Med.Chem.Lett. (2019)

Release Date

2019-09-18

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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