SMTL ID : 7a79.1

Crystal structure of RXR gamma LBD in complexes with palmitic acid and GRIP-1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-2-2-mer

Ligands

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 13 residues within 4Å: Chain A: I.39, A.42, A.43, Q.46, N.77, F.84, R.87, L.97, A.98, I.116, C.203, L.207, F.210 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.39, A:A.42, A:A.43, A:Q.46, A:F.84, A:F.84, A:F.84, A:I.116, A:L.207, A:L.207, A:F.210 Hydrogen bonds: A:A.98 Salt bridges: A:R.87 PLM.2: 14 residues within 4Å: Chain B: I.39, A.42, A.43, Q.46, N.77, F.84, R.87, L.97, A.98, I.116, F.117, C.203, L.207, F.210 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:I.39, B:I.39, B:A.42, B:A.43, B:F.84, B:F.84, B:F.84, B:F.117, B:L.207, B:L.207, B:F.210 Hydrogen bonds: B:A.98 Salt bridges: B:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Comprehensive Set of Tertiary Complex Structures and Palmitic Acid Binding Provide Molecular Insights into Ligand Design for RXR Isoforms. Int J Mol Sci (2020)

Release Date

2020-10-21

Peptides

Retinoic acid receptor RXR-gamma: AB
Nuclear receptor coactivator 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Retinoic acid receptor RXR-gamma

Nuclear receptor coactivator 2

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