SMTL ID : 6szn.1 (1 other biounit)

Crystal structure of YTHDC1 with fragment 8 (DHU_DC1_006)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.18, T.19, S.20, K.21 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.18, A:S.20, A:K.21 Water bridges: A:G.18, A:S.20, A:L.22 Salt bridges: A:K.21 SO4.2: 5 residues within 4Å: Chain A: K.60, W.139, G.151, Q.152, E.153 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.152, A:E.153 Water bridges: A:W.139, A:Q.152, A:Q.152, A:E.153, A:E.153 Salt bridges: A:K.60 SO4.3: 2 residues within 4Å: Chain A: H.94, H.95 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.95, A:H.95 Salt bridges: A:H.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments. Acs Chem.Biol. (2020)

Release Date

2020-03-04

Peptides

YTH domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YTH domain-containing protein 1

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