SMTL ID : 6t0d.1 (1 other biounit)

Crystal structure of YTHDC1 with fragment 27 (DHU_DC1_256)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x M4N: ~{N}-methyl-3-phenyl-1~{H}-pyrazole-5-carboxamide(Non-covalent)

M4N.1: 10 residues within 4Å: Chain A: K.35, S.36, N.37, N.41, W.51, S.52, L.54, W.102, L.113, D.150 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.54, A:D.150 Hydrogen bonds: A:N.41, A:S.52, A:S.52 Water bridges: A:T.53, A:T.53 pi-Cation interactions: A:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments. Acs Chem.Biol. (2020)

Release Date

2020-03-04

Peptides

YTHDC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YTHDC1

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