SMTL ID : 6ym8.1 (1 other biounit)

Crystal structure of YTHDC1 with compound YLI_DC1_002

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x OYN: 2-chloranyl-~{N}-methyl-9~{H}-purin-6-amine(Non-covalent)

OYN.1: 13 residues within 4Å: Chain A: K.35, S.36, N.37, N.38, N.41, W.51, S.52, W.102, V.103, P.105, M.108, L.113, D.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.37, A:N.37, A:N.41, A:S.52 Halogen bonds: A:N.38

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.18, T.19, S.20, K.21 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.18, A:S.20, A:K.21 Water bridges: A:S.20, A:K.21, A:K.21, A:K.21, A:K.21, A:L.22, A:D.173 Salt bridges: A:K.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Crystal structure of YTHDC1 with compound YLI_DC1_002. To Be Published

Release Date

2021-04-14

Peptides

YTHDC1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YTHDC1

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