- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.8: 7 residues within 4Å:- Chain A: Q.128, Q.129, Y.132, D.162, T.163, K.166
- Ligands: EDO.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.166
- Water bridges: A:Y.132
PGE.28: 7 residues within 4Å:- Chain C: Q.128, Q.129, Y.132, D.162, T.163, K.166
- Ligands: EDO.23
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.166
- Water bridges: C:Y.132
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 7 residues within 4Å:- Chain A: V.151, R.154, A.180, G.202, E.203, F.260, N.264
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.154, A:G.202, A:N.264
- Water bridges: A:E.203, A:E.203
GOL.20: 7 residues within 4Å:- Chain B: Y.149, V.151, R.154, G.202, F.260, N.264
- Ligands: EDO.14
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.154, B:R.154, B:G.202, B:N.264
- Water bridges: B:N.264
GOL.29: 7 residues within 4Å:- Chain C: V.151, R.154, A.180, G.202, E.203, F.260, N.264
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.154, C:G.202, C:N.264
GOL.40: 7 residues within 4Å:- Chain D: Y.149, V.151, R.154, G.202, F.260, N.264
- Ligands: EDO.34
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:Y.149, D:R.154, D:R.154, D:G.202, D:N.264
- Water bridges: D:N.264
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ACT: ACETATE ION(Non-functional Binders)
ACT.15: 4 residues within 4Å:- Chain B: Y.273, G.276, I.278
- Ligands: EDO.12
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.273
ACT.16: 3 residues within 4Å:- Chain B: T.98, H.99, V.102
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:H.99
- Water bridges: A:L.285
ACT.17: 3 residues within 4Å:- Chain A: T.67, R.284
- Chain B: H.99
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:H.99, A:R.284
ACT.18: 4 residues within 4Å:- Chain B: K.15, F.168, R.169, E.172
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.172
- Salt bridges: B:K.15, B:R.196
ACT.35: 4 residues within 4Å:- Chain D: Y.273, G.276, I.278
- Ligands: EDO.32
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Y.273
ACT.36: 3 residues within 4Å:- Chain D: T.98, H.99, V.102
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Water bridges: C:L.285
- Hydrophobic interactions: D:H.99
ACT.37: 3 residues within 4Å:- Chain C: T.67, R.284
- Chain D: H.99
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Salt bridges: C:R.284, D:H.99
ACT.38: 4 residues within 4Å:- Chain D: K.15, F.168, R.169, E.172
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:E.172
- Salt bridges: D:K.15, D:R.196
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.19: 7 residues within 4Å:- Chain B: Q.128, Q.129, Y.132, S.160, D.162, T.163, K.166
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.160, B:S.160, B:K.166
- Water bridges: B:Q.129
PEG.39: 7 residues within 4Å:- Chain D: Q.128, Q.129, Y.132, S.160, D.162, T.163, K.166
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:S.160, D:S.160, D:D.162, D:K.166
- Water bridges: D:Q.129, D:T.163
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Majdi Yazdi, M. et al., Asparagine-84, a regulatory allosteric site residue, helps maintain the quaternary structure of Campylobacter jejuni dihydrodipicolinate synthase. J.Struct.Biol. (2020)
- Release Date
- 2019-12-04
- Peptides
- 4-hydroxy-tetrahydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
DD
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ACT: ACETATE ION(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Majdi Yazdi, M. et al., Asparagine-84, a regulatory allosteric site residue, helps maintain the quaternary structure of Campylobacter jejuni dihydrodipicolinate synthase. J.Struct.Biol. (2020)
- Release Date
- 2019-12-04
- Peptides
- 4-hydroxy-tetrahydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
DD
E