- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x 3VN: (2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: K.243, K.246, K.247
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:K.243, H2O.3, H2O.13
MG.6: 5 residues within 4Å:- Chain B: A.93, G.94, L.117, S.118, V.119
No protein-ligand interaction detected (PLIP)MG.7: 2 residues within 4Å:- Chain B: N.254, V.301
No protein-ligand interaction detected (PLIP)MG.11: 3 residues within 4Å:- Chain C: K.243, K.246, K.247
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:K.243, H2O.28, H2O.39
MG.15: 5 residues within 4Å:- Chain D: A.93, G.94, L.117, S.118, V.119
No protein-ligand interaction detected (PLIP)MG.16: 2 residues within 4Å:- Chain D: N.254, V.301
No protein-ligand interaction detected (PLIP)- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 1 residues within 4Å:- Chain A: K.15
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.15
- Water bridges: A:K.15
ACT.4: 4 residues within 4Å:- Chain A: K.303, K.304, Y.305, K.306
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.303
- Water bridges: A:K.306
- Salt bridges: A:K.306
ACT.8: 5 residues within 4Å:- Chain B: V.151, R.154, G.202, F.260, N.264
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Water bridges: A:K.125, B:R.154
- Salt bridges: A:K.125, B:R.154
- Hydrophobic interactions: B:F.260
- Hydrogen bonds: B:N.264
ACT.12: 1 residues within 4Å:- Chain C: K.15
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.15
- Water bridges: C:K.15
ACT.13: 4 residues within 4Å:- Chain C: K.303, K.304, Y.305, K.306
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:K.303
- Water bridges: C:K.306
- Salt bridges: C:K.306
ACT.17: 5 residues within 4Å:- Chain D: V.151, R.154, G.202, F.260, N.264
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain C- Hydrophobic interactions: D:F.260
- Hydrogen bonds: D:N.264
- Water bridges: D:R.154, C:K.125
- Salt bridges: D:R.154, C:K.125
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.9: 6 residues within 4Å:- Chain B: Q.128, Q.129, Y.132, D.162, T.163, K.166
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.166
- Water bridges: B:Q.129, B:Y.132
PGE.18: 6 residues within 4Å:- Chain D: Q.128, Q.129, Y.132, D.162, T.163, K.166
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:K.166
- Water bridges: D:Q.129, D:Y.132, D:Y.132
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Saran, S. et al., A TIGHT DIMER INTERFACE N84 RESIDUE, PLAYS A CRITICAL ROLE IN THE TRANSMISSION OF THE ALLOSTERIC INHIBITION SIGNALS IN Cj.DHDPS. To Be Published
- Release Date
- 2021-11-03
- Peptides
- 4-hydroxy-tetrahydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x 3VN: (2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Saran, S. et al., A TIGHT DIMER INTERFACE N84 RESIDUE, PLAYS A CRITICAL ROLE IN THE TRANSMISSION OF THE ALLOSTERIC INHIBITION SIGNALS IN Cj.DHDPS. To Be Published
- Release Date
- 2021-11-03
- Peptides
- 4-hydroxy-tetrahydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D