- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LYS: LYSINE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: A.93, G.94, L.117, S.118, V.119
No protein-ligand interaction detected (PLIP)MG.3: 1 residues within 4Å:- Chain A: K.83
No protein-ligand interaction detected (PLIP)MG.13: 5 residues within 4Å:- Chain B: A.93, G.94, L.117, S.118, V.119
No protein-ligand interaction detected (PLIP)MG.14: 1 residues within 4Å:- Chain B: D.52
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.52, H2O.14, H2O.14, H2O.15
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 4 residues within 4Å:- Chain A: K.303, K.304, Y.305, K.306
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.306
EDO.5: 5 residues within 4Å:- Chain A: S.212, G.214, E.240, Y.242
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.240, A:Y.242
EDO.6: 3 residues within 4Å:- Chain A: P.195, G.214, K.216
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.216, A:K.216
- Water bridges: A:L.191
EDO.7: 4 residues within 4Å:- Chain A: D.162, I.165, K.166, R.169
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.162
EDO.8: 9 residues within 4Å:- Chain A: L.211, G.214, G.215, K.216, A.237, L.238, E.240, Y.242
- Ligands: EDO.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.215, A:K.216
EDO.9: 5 residues within 4Å:- Chain A: D.250, E.251, Y.253, N.254, Y.305
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.253, A:N.254, A:Y.305
EDO.15: 5 residues within 4Å:- Chain B: D.250, E.251, Y.253, N.254, Y.305
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.253, B:N.254
EDO.16: 3 residues within 4Å:- Chain A: H.99
- Chain B: G.32, R.284
No protein-ligand interaction detected (PLIP)EDO.17: 3 residues within 4Å:- Chain B: P.152, G.156, C.157
No protein-ligand interaction detected (PLIP)- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.10: 5 residues within 4Å:- Chain A: Q.129, Y.132, D.162, T.163, K.166
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.166
PGE.20: 6 residues within 4Å:- Chain B: Q.128, Q.129, Y.132, D.162, T.163, K.166
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.166
- Water bridges: B:Q.129, B:Y.132, B:Y.132
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.18: 5 residues within 4Å:- Chain B: I.19, G.20, D.52, H.235, L.238
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.52
ACT.19: 2 residues within 4Å:- Chain A: T.67
- Chain B: H.99
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Salt bridges: A:R.284, B:H.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Saran, S. et al., A TIGHT DIMER INTERFACE N84 RESIDUE, PLAYS A CRITICAL ROLE IN THE TRANSMISSION OF THE ALLOSTERIC INHIBITION SIGNALS IN Cj.DHDPS. To Be Published
- Release Date
- 2021-11-03
- Peptides
- 4-hydroxy-tetrahydrodipicolinate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.77 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LYS: LYSINE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Saran, S. et al., A TIGHT DIMER INTERFACE N84 RESIDUE, PLAYS A CRITICAL ROLE IN THE TRANSMISSION OF THE ALLOSTERIC INHIBITION SIGNALS IN Cj.DHDPS. To Be Published
- Release Date
- 2021-11-03
- Peptides
- 4-hydroxy-tetrahydrodipicolinate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
D