SMTL ID : 6u65.2 (3 other biounits)

Mcl-1 bound to compound 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x Q0A: 2-[({4-[(4-fluorophenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid(Non-covalent)

Q0A.1: 13 residues within 4Å: Chain A: F.61, M.64, L.68, M.83, V.86, R.96, T.99, L.100, F.103, G.104, V.107, L.123, I.127 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:M.64, A:L.68, A:L.68, A:V.86, A:V.86, A:L.100 Salt bridges: A:R.96 pi-Stacking: A:F.103

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: T.92, T.134, K.135, R.136, D.137, W.138 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.138 Hydrogen bonds: A:K.135, A:D.137, A:W.138 ACT.3: 5 residues within 4Å: Chain A: L.65, R.66, D.69, I.70, H.110 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.65 Hydrogen bonds: A:L.65, A:D.69, A:I.70 Water bridges: A:D.69, A:D.69 Salt bridges: A:K.71, A:H.110

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: Y.18, E.21, Q.22, R.47, D.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.21, A:Q.22, A:Q.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kump, K.J. et al., Discovery and Characterization of 2,5-Substituted Benzoic Acid Dual Inhibitors of the Anti-apoptotic Mcl-1 and Bfl-1 Proteins. J.Med.Chem. (2020)

Release Date

2020-03-04

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Induced myeloid leukemia cell differentiation protein Mcl-1

Related Entries With Identical Sequence