SMTL ID : 6u67.1 (1 other biounit)

Mcl-1 bound to compound 24

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

3 x Q01: 2-({[4-(4-tert-butylphenyl)piperazin-1-yl]sulfonyl}amino)-5-{[3-oxo-3-(phenylamino)propyl]sulfanyl}benzoic acid(Non-covalent)

Q01.1: 15 residues within 4Å: Chain A: M.64, V.76, L.79, S.80, M.83, V.86, F.87, R.96, T.99, L.100, F.103, L.123, S.126, I.127 Ligands: BNL.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.79, A:M.83, A:L.100, A:F.103, A:I.127 Water bridges: A:V.86 Salt bridges: A:R.96 Q01.2: 3 residues within 4Å: Chain A: V.91, N.93 Ligands: BNL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.93 Water bridges: A:R.96, A:R.96 Q01.3: 6 residues within 4Å: Chain A: H.57, G.95, T.99, F.151, F.152 Ligands: BNL.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.151, A:F.152 pi-Cation interactions: A:H.57

1 x BNL: BIPHENYL(Non-covalent)

BNL.4: 7 residues within 4Å: Chain A: D.89, V.91, R.96, T.99 Ligands: Q01.1, Q01.2, Q01.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.96, A:T.99 pi-Cation interactions: A:R.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kump, K.J. et al., Discovery and Characterization of 2,5-Substituted Benzoic Acid Dual Inhibitors of the Anti-apoptotic Mcl-1 and Bfl-1 Proteins. J.Med.Chem. (2020)

Release Date

2020-03-04

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Induced myeloid leukemia cell differentiation protein Mcl-1

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