SMTL ID : 6u65.3 (3 other biounits)

Mcl-1 bound to compound 19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x Q0A: 2-[({4-[(4-fluorophenyl)methyl]piperazin-1-yl}sulfonyl)amino]-5-[(2-phenylethyl)sulfanyl]benzoic acid(Non-covalent)

Q0A.1: 13 residues within 4Å: Chain A: M.64, L.68, M.83, V.86, R.96, T.99, L.100, F.103, G.104, V.107, L.123, I.127 Ligands: PEG.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.64, A:L.68, A:V.86, A:L.100 Salt bridges: A:R.96 pi-Stacking: A:F.103

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: L.65, F.106, K.109, H.110 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.65, A:F.106 Hydrogen bonds: A:H.110 ACT.3: 1 residues within 4Å: Ligands: PEG.4 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: R.81, H.85 Ligands: Q0A.1, ACT.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.81

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: E.6, R.9, E.13, G.33, R.34, S.35 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.33, A:R.34, A:S.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kump, K.J. et al., Discovery and Characterization of 2,5-Substituted Benzoic Acid Dual Inhibitors of the Anti-apoptotic Mcl-1 and Bfl-1 Proteins. J.Med.Chem. (2020)

Release Date

2020-03-04

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Induced myeloid leukemia cell differentiation protein Mcl-1

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