SMTL ID : 6u88.1

CBD-bound full-length rat TRPV2 in nanodiscs, state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x P0T: cannabidiol(Non-covalent)

P0T.1: 12 residues within 4Å: Chain A: L.631, Y.634, V.635, L.638 Chain D: I.533, L.537, F.540, L.541, Y.544, F.601, L.637, M.640 15 PLIP interactions: 6 interactions with chain A, 9 interactions with chain D Hydrophobic interactions: A:L.631, A:L.631, A:Y.634, A:V.635, A:L.638, D:I.533, D:L.537, D:F.540, D:F.540, D:L.541, D:L.541, D:Y.544, D:F.601, D:L.637 Hydrogen bonds: A:V.635 P0T.2: 12 residues within 4Å: Chain A: I.533, L.537, F.540, L.541, Y.544, F.601, L.637, M.640 Chain B: L.631, Y.634, V.635, L.638 15 PLIP interactions: 9 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:I.533, A:L.537, A:F.540, A:F.540, A:L.541, A:L.541, A:Y.544, A:F.601, A:L.637, B:L.631, B:L.631, B:Y.634, B:V.635, B:L.638 Hydrogen bonds: B:V.635 P0T.3: 12 residues within 4Å: Chain B: I.533, L.537, F.540, L.541, Y.544, F.601, L.637, M.640 Chain C: L.631, Y.634, V.635, L.638 15 PLIP interactions: 9 interactions with chain B, 6 interactions with chain C Hydrophobic interactions: B:I.533, B:L.537, B:F.540, B:F.540, B:L.541, B:L.541, B:Y.544, B:F.601, B:L.637, C:L.631, C:L.631, C:Y.634, C:V.635, C:L.638 Hydrogen bonds: C:V.635 P0T.4: 12 residues within 4Å: Chain C: I.533, L.537, F.540, L.541, Y.544, F.601, L.637, M.640 Chain D: L.631, Y.634, V.635, L.638 15 PLIP interactions: 9 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: C:I.533, C:L.537, C:F.540, C:F.540, C:L.541, C:L.541, C:Y.544, C:F.601, C:L.637, D:L.631, D:L.631, D:Y.634, D:V.635, D:L.638 Hydrogen bonds: D:V.635

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pumroy, R.A. et al., Molecular mechanism of TRPV2 channel modulation by cannabidiol. Elife (2019)

Release Date

2019-10-16

Peptides

Transient receptor potential cation channel subfamily V member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Transient receptor potential cation channel subfamily V member 2

Related Entries With Identical Sequence