SMTL ID : 6ujh.1 (1 other biounit)

Discovery of fragment-inspired heterocyclic benzenesulfonamides as inhibitors of the WDR5-MYC interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

1 x QBS: (2R)-2-(4-chlorophenyl)-3-oxobutanenitrile(Non-covalent)

QBS.1: 7 residues within 4Å: Chain A: P.203, N.204, Y.207, F.245, V.247, K.251, L.267 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.203, A:P.203, A:F.245, A:V.247

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.102, T.103 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.103, A:T.103 Water bridges: A:K.102 Salt bridges: A:K.102 SO4.3: 4 residues within 4Å: Chain A: K.200, N.244, A.287, C.288 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.244, A:C.288 Water bridges: A:K.200, A:K.200, A:K.200, A:F.245 Salt bridges: A:K.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chacon Simon, S. et al., Discovery of WD Repeat-Containing Protein 5 (WDR5)-MYC Inhibitors Using Fragment-Based Methods and Structure-Based Design. J.Med.Chem. (2020)

Release Date

2020-04-15

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

Related Entries With Identical Sequence