SMTL ID : 6uoz.1

Discovery of fragment-inspired heterocyclic benzenesulfonmides as inhibitors of the WDR5-MYC interaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-dimer

Ligands

2 x QF1: 5-bromo-3-chloro-N-[1-cyclopentyl-2-(methylsulfonyl)-1H-imidazol-4-yl]-2-hydroxybenzene-1-sulfonamide(Non-covalent)

QF1.1: 12 residues within 4Å: Chain A: S.193, P.194, N.195, Y.198, L.210, F.236, S.237, V.238, K.242, W.243, L.258, Q.259 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.194, A:L.210, A:F.236, A:V.238, A:K.242, A:L.258, A:L.258 Hydrogen bonds: A:N.195 Halogen bonds: A:W.243 QF1.2: 12 residues within 4Å: Chain B: S.193, P.194, N.195, Y.198, L.210, F.236, S.237, V.238, K.242, W.243, L.258, Q.259 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.210, B:F.236, B:V.238, B:K.242, B:L.258, B:L.258 Hydrogen bonds: B:N.195 Halogen bonds: B:W.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chacon Simon, S. et al., Discovery of WD Repeat-Containing Protein 5 (WDR5)-MYC Inhibitors Using Fragment-Based Methods and Structure-Based Design. J.Med.Chem. (2020)

Release Date

2020-04-15

Peptides

WD repeat domain 5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

WD repeat domain 5

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