SMTL ID : 6v8w.20 (25 other biounits)

CDYL2 chromodomain in complex with a synthetic peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x IVA- PHE- ALA- PHE- 5T3- SER- NH2: IVA-PHE-ALA-PHE-5T3-SER-NH2(Non-covalent)

IVA-PHE-ALA-PHE-5T3-SER-NH2.1: 13 residues within 4Å: Chain A: G.4, D.5, L.6, Y.7, E.8, V.9, W.29, Y.32, E.40, H.44, L.45, L.46, C.48 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.6, A:L.6, A:Y.7, A:E.8, A:V.9, A:W.29, A:W.29, A:W.29, A:Y.32, A:L.45, A:L.46 Hydrogen bonds: A:Y.7, A:Y.7, A:V.9, A:E.40, A:H.44, A:L.46, A:L.46

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: W.23, Y.25, E.42 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol (2020)

Release Date

2020-01-15

Peptides

Chromodomain Y-like protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

Chromodomain Y-like protein 2

Related Entries With Identical Sequence