SMTL ID : 8sp6.6 (5 other biounits)

COMPLEX STRUCTURE OF CDYL2 WITH AN ANTAGONIST

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 5R0- PHE- ALA- LEU- MLZ- 5R5: (5R0)FAL(MLZ)(5R5)(Non-covalent)

5R0-PHE-ALA-LEU-MLZ-5R5.1: 18 residues within 4Å: Chain A: G.4, D.5, L.6, Y.7, E.8, V.9, W.29, Y.32, T.38, E.40, H.44, L.45, L.46, H.47, C.48, E.50, F.51 Ligands: I9A.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.6, A:Y.7, A:E.8, A:V.9, A:W.29, A:W.29, A:H.44, A:L.45, A:E.50, A:F.51 Hydrogen bonds: A:D.5, A:Y.7, A:Y.7, A:V.9, A:E.40, A:H.44, A:H.44, A:L.46, A:L.46 pi-Stacking: A:F.51

1 x I9A: (1s,4s)-bicyclo[2.2.1]heptane(Non-covalent)

I9A.2: 4 residues within 4Å: Chain A: Y.7, Y.32, E.36 Ligands: 5R0-PHE-ALA-LEU-MLZ-5R5.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, X. et al., COMPLEX STRUCTURE OF CDYL2 WITH AN ANTAGONIST. To be published

Release Date

2024-03-13

Peptides

Chromodomain Y-like protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Chromodomain Y-like protein 2

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