SMTL ID : 6vm0.1

Full length Glycine receptor reconstituted in lipid nanodisc in Gly/IVM-conformation (State-1)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
homo-pentamer
Ligands
5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)
5 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)
5 x GLY: GLYCINE(Non-covalent)
5 x IVM: (2aE,4E,5'S,6S,6'R,7S,8E,11R,13R,15S,17aR,20R,20aR,20bS)-6'-[(2S)-butan-2-yl]-20,20b-dihydroxy-5',6,8,19-tetramethyl-17 -oxo-3',4',5',6,6',10,11,14,15,17,17a,20,20a,20b-tetradecahydro-2H,7H-spiro[11,15-methanofuro[4,3,2-pq][2,6]benzodioxacy clooctadecine-13,2'-pyran]-7-yl 2,6-dideoxy-4-O-(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)-3-O-methyl-alpha-L-arabino-hexopyranoside(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kumar, A. et al., Mechanisms of activation and desensitization of full-length glycine receptor in lipid nanodiscs. Nat Commun (2020)
Release Date
2020-07-29
Peptides
Glycine receptor subunit alphaZ1: ABCDE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
E
C
C
D
B
E
D
Membrane
We predict this structure to be a membrane protein.

Glycine receptor subunit alphaZ1

Toggle Identical (ABCDE)

Related Entries With Identical Sequence

6ubs.1 | 6ubt.1 | 6vm2.1 | 6vm3.1