SMTL ID : 7m6n.1

Full length alpha1 Glycine receptor in presence of 0.1mM Glycine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.61 Å

Oligo State

homo-pentamer

Ligands

5 x GLY: GLYCINE(Non-covalent)

GLY.1: 7 residues within 4Å: Chain A: F.183, Y.226, T.228 Chain D: F.87, R.89, L.141, S.153 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain D Hydrogen bonds: A:F.183, A:T.228, D:S.153, D:S.153 Salt bridges: D:R.89 GLY.3: 7 residues within 4Å: Chain B: F.183, Y.226, T.228 Chain C: F.87, R.89, L.141, S.153 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:S.153, C:S.153, B:F.183, B:T.228 Salt bridges: C:R.89 GLY.5: 7 residues within 4Å: Chain A: F.87, R.89, L.141, S.153 Chain C: F.183, Y.226, T.228 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:F.183, C:T.228, A:S.153, A:S.153 Salt bridges: A:R.89 GLY.7: 7 residues within 4Å: Chain D: F.183, Y.226, T.228 Chain E: F.87, R.89, L.141, S.153 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:S.153, E:S.153, D:F.183, D:T.228 Salt bridges: E:R.89 GLY.9: 7 residues within 4Å: Chain B: F.87, R.89, L.141, S.153 Chain E: F.183, Y.226, T.228 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain B Hydrogen bonds: E:F.183, E:T.228, B:S.153, B:S.153 Salt bridges: B:R.89

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.55, P.59, P.60, N.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.55, A:P.60 NAG.4: 4 residues within 4Å: Chain B: N.55, P.59, P.60, N.62 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.55, B:P.60 NAG.6: 4 residues within 4Å: Chain C: N.55, P.59, P.60, N.62 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.55, C:P.60 NAG.8: 4 residues within 4Å: Chain D: N.55, P.59, P.60, N.62 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.55, D:P.60 NAG.10: 4 residues within 4Å: Chain E: N.55, P.59, P.60, N.62 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.55, E:P.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs. Nat Commun (2022)

Release Date

2022-08-03

Peptides

Glycine receptor subunit alphaZ1: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

D
B

E
C

Membrane

We predict this structure to be a membrane protein.
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Glycine receptor subunit alphaZ1

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