SMTL ID : 7m6m.1

Full length alpha1 Glycine receptor in presence of 32uM Tetrahydrocannabinol

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: P.60, N.62 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain B: P.60, N.62 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain C: P.60, N.62 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain D: P.60, N.62 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain E: P.60, N.62 No protein-ligand interaction detected (PLIP)

5 x TCI: (6aR,10aR)-6,6,9-trimethyl-3-pentyl-6a,7,8,10a-tetrahydro-6H-benzo[c]chromen-1-ol(Non-covalent)

TCI.6: 4 residues within 4Å: Chain A: S.320, E.324, F.418, V.421 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.418, A:V.421 TCI.7: 4 residues within 4Å: Chain B: S.320, E.324, F.418, V.421 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.418, B:V.421 TCI.8: 4 residues within 4Å: Chain C: S.320, E.324, F.418, V.421 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.418, C:V.421 TCI.9: 4 residues within 4Å: Chain D: S.320, E.324, F.418, V.421 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.418, D:V.421 TCI.10: 4 residues within 4Å: Chain E: S.320, E.324, F.418, V.421 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.418, E:V.421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs. Nat Commun (2022)

Release Date

2022-08-03

Peptides

Glycine receptor subunit alphaZ1: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
D

Membrane

We predict this structure to be a membrane protein.
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Glycine receptor subunit alphaZ1

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