SMTL ID : 6w2b.1

Anomalous bromine signal reveals the position of Br-paroxetine complexed with the serotonin transporter at the central site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.134, N.135, H.150 No protein-ligand interaction detected (PLIP)

1 x RFS: Br-paroxetine(Non-covalent)

RFS.2: 15 residues within 4Å: Chain A: Y.22, A.23, D.25, A.96, I.99, F.262, S.263, G.265, F.268, S.365, T.366, G.369, L.370, T.424, V.428 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.22, A:I.99, A:F.262, A:F.268 Hydrogen bonds: A:Y.22, A:D.25, A:S.365, A:T.366

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Coleman, J.A. et al., Chemical and structural investigation of the paroxetine-human serotonin transporter complex. Elife (2020)

Release Date

2020-03-25

Peptides

Sodium-dependent serotonin transporter: A
8B6 heavy chain antibody fragment: B
8B6 light chain antibody fragment: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent serotonin transporter

8B6 heavy chain antibody fragment

8B6 light chain antibody fragment

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